Abstract
Chimeric antigen receptor (CAR) T-cell therapy for malignant tumors has reached a crucial stage, with recent studies underscoring the role of T-cell exhaustion in determining the efficacy of CAR-T therapy. This trailblazing discovery has opened new avenues to augment the potency of CAR-T therapy. Basic leucine zipper ATF-like transcription factor (BATF) is indispensable in alleviating T-cell exhaustion and is pivotal in the early stages of CD8+ T-cell differentiation. In cooperation with other transcription factors, it plays a key role in the differentiation and maturation processes of exhausted T cells. A deeper comprehension of BATF‘s mechanisms in T-cell biology may yield novel insights into amplifying the efficacy of CAR-T therapy.
Plain language summary
Chimeric antigen receptor (CAR) T-cell therapy, a treatment that boosts the body's immune system to fight cancer, has made significant progress. Recent research has shown that T-cell exhaustion, which is when the body's immune cells become less effective, affects how well this therapy works. This finding has opened new possibilities to make CAR-T therapy more effective. There is a specific protein called BATF that plays an important role in reducing T-cell exhaustion and influencing the early development of certain immune cells. This review describes how BATF interacts with exhausted T cells, to improve CAR-T therapy. By understanding how BATF works in the immune system, new ways to enhance CAR-T therapy and its ability to fight cancer may be found.
Papers of special note have been highlighted as: • of interest; •• of considerable interest
Reference
- 1. . T cell exhaustion. Nat. Immunol. 12(6), 492–499 (2011).
- 2. . Overcoming T cell exhaustion in infection and cancer. Trends Immunol. 36(4), 265–276 (2015).
- 3. . CAR T cell immunotherapy for human cancer. Science 359(6382), 1361–1365 (2018).
- 4. . Molecular and cellular insights into T cell exhaustion. Nat. Rev. Immunol. 15(8), 486–499 (2015).
- 5. . CD8 T cell exhaustion during chronic viral infection and cancer. Ann. Rev. Immunol. 37, 457–495 (2019).
- 6. Pan-cancer single-cell landscape of tumor-infiltrating T cells. Science 374(6574), 1–11 (2021). •• The use of single-cell sequencing technology revealed the role of BATF in the development of tumor-infiltrating T cells.
- 7. Progenitor and terminal subsets of CD8+ T cells cooperate to contain chronic viral infection. Science 338(6111), 1220–1225 (2012).
- 8. Molecular signature of CD8+ T cell exhaustion during chronic viral infection. Immunity 27(4), 670–684 (2007).
- 9. . Selective expansion of a subset of exhausted CD8 T cells by alphaPD-L1 blockade. Proc. Natl Acad. Sci. USA 105(39), 15016–15021 (2008).
- 10. Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates. bioRxiv
doi: 10.1101/2022.03.27.485974 (2022). - 11. High antigen levels induce an exhausted phenotype in a chronic infection without impairing T cell expansion and survival. J. Exp. Med. 213(9), 1819–1834 (2016).
- 12. . The multifaceted output of c-Jun biological activity: focus at the junction of CD8 T cell activation and exhaustion. Cells 9(11), 1–26 (2020).
- 13. BATF and IRF4 cooperate to counter exhaustion in tumor-infiltrating CAR T cells. Nat. Immunol. 22(8), 983–995 (2021). • The summary of how BATF and IRF4 jointly promote the expression of exhaustion status in CAR-T cells.
- 14. BATF regulates progenitor to cytolytic effector CD8(+) T cell transition during chronic viral infection. Nat. Immunol. 22(8), 996–1007 (2021).
- 15. Batf coordinates multiple aspects of B and T cell function required for normal antibody responses. J. Exp. Med. 207(5), 933–942 (2010).
- 16. Transcription factor networks in aged naïve CD4 T cells bias lineage differentiation. Aging Cell 18(4), e12957 (2019).
- 17. Batf-mediated epigenetic control of effector CD8(+) T cell differentiation. Sci. Immunol. 7(68), eabi4919 (2022).
- 18. . Basic leucine zipper transcription factor, ATF-like (BATF) regulates epigenetically and energetically effector CD8 T-cell differentiation via Sirt1 expression. Proc. Natl Acad. Sci. USA 108(36), 14885–14889 (2011).
- 19. Genetically targeting the BATF family transcription factors BATF and BATF3 in the mouse abrogates effector T cell activities and enables long-term heart allograft survival. Am. J. Transplant. 22(2), 414–426 (2022).
- 20. Ablation of BATF alleviates transplant rejection via abrogating the effector differentiation and memory responses of CD8(+) T cells. Front. Immunol. 13, 882721 (2022).
- 21. Transcription factor IRF4 promotes CD8(+) T cell exhaustion and limits the development of memory-like T cells during chronic infection. Immunity 47(6), 1129–1141 (2017).
- 22. A critical role of IL-21-induced BATF in sustaining CD8-T-cell-mediated chronic viral control. Cell Rep. 13(6), 1118–1124 (2015).
- 23. Transcriptional analysis of HIV-specific CD8+ T cells shows that PD-1 inhibits T cell function by upregulating BATF. Nat. Med. 16(10), 1147–1151 (2010).
- 24. Distinct epigenetic features of tumor-reactive CD8+ T cells in colorectal cancer patients revealed by genome-wide DNA methylation analysis. Genome Biol. 21(1), 2 (2019).
- 25. A phenotypic signature that identifies neoantigen-reactive T cells in fresh human lung cancers. Cancer Cell 40(5), 479–493 (2022).
- 26. Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer. Nat. Genet. 54(7), 985–995 (2022).
- 27. Defining T cell states associated with response to checkpoint immunotherapy in melanoma. Cell 175(4), 998–1013 (2018). •• BATF might serve as an important immune checkpoint in tumor therapy.
- 28. PD1(Hi) CD8(+) T cells correlate with exhausted signature and poor clinical outcome in hepatocellular carcinoma. J. Immunother. Cancer 7(1), 331 (2019).
- 29. Single-cell RNA-seq reveals TOX as a key regulator of CD8(+) T cell persistence in chronic infection. Nat. Immunol. 20(7), 890–901 (2019). • The application of single-cell technology revealed the significant role of BATF in the induction of T-cell exhaustion during chronic infection.
- 30. A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes. Science 338(6109), 975–980 (2012).
- 31. BATF-JUN is critical for IRF4-mediated transcription in T cells. Nature 490(7421), 543–546 (2012).
- 32. Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response. Nat. Med. 24(10), 1550–1558 (2018).
- 33. Rescue of exhausted CD8 T cells by PD-1-targeted therapies is CD28-dependent. Science 355(6332), 1423–1427 (2017).
- 34. Transcriptional analysis of HIV-specific CD8 + T cells shows that PD-1 inhibits T cell function by upregulating BATF. Nat. Med. 16(10), 1147–1151 (2010).
- 35. Rejuvenation of tumour-specific T cells through bispecific antibodies targeting PD-L1 on dendritic cells. Nat. Biomed. Eng. 5(11), 1261–1273 (2021).
- 36. . Interleukin-21: basic biology and implications for cancer and autoimmunity. Ann. Rev. Immunol. 26, 57–79 (2008).
- 37. Harnessing the IL-21-BATF pathway in the CD8(+) T cell anti-tumor response. Cancers (Basel) 13(6), 1–15 (2021). •• The first time the signaling pathways associated with IL-21 and BATF were uncovered.
- 38. Transcriptome profiling of porcine naïve, intermediate and terminally differentiated CD8(+) T cells. Front. Immunol. 13, 849922 (2022).
- 39. Distinct roles of Brd2 and Brd4 in potentiating the transcriptional program for Th17 cell differentiation. Mol. Cell 65(6), 1068–1080 (2017).
- 40. . BET domain co-regulators in obesity, inflammation and cancer. Nat. Rev. Cancer 12(7), 465–477 (2012).
- 41. Intramuscular therapeutic vaccination targeting HPV16 induces T cell responses that localize in mucosal lesions. Sci. Transl. Med. 6(221), 221ra213 (2014).
- 42. . T cell metabolism in homeostasis and cancer immunity. Curr. Opin. Biotechnol. 68, 240–250 (2021).
- 43. Safety and persistence of adoptively transferred autologous CD19-targeted T cells in patients with relapsed or chemotherapy refractory B-cell leukemias. Blood 118(18), 4817–4828 (2011).
- 44. Phase I escalating-dose trial of CAR-T therapy targeting CEA(+) metastatic colorectal cancers. Mol. Ther. 25(5), 1248–1258 (2017).
- 45. . Immune checkpoint blockade and CAR-T cell therapy in hematologic malignancies. J. Hematol. Oncol. 12(1), 59 (2019).
- 46. Single-cell ATAC-seq maps the comprehensive and dynamic chromatin accessibility landscape of CAR-T cell dysfunction. Leukemia 36(11), 2656–2668 (2022).
- 47. Depletion of BATF in CAR-T cells enhances antitumor activity by inducing resistance against exhaustion and formation of central memory cells. Cancer Cell 40(11), 1407–1422 (2022). • Experimental studies demonstrated the significant utility of BATF in CAR-T-cell therapy.
- 48. Enhancing CAR T cell persistence through ICOS and 4-1BB costimulation. JCI Insight 3(1), 1–17 (2018).
- 49. BATF and IRF4 prevent CAR T-cell exhaustion. Cancer Discov. 11(9), Of9 (2021). •• The first time the reversal effect of BATF and IRF4 on the exhaustion status of CAR-T cells was revealed.
- 50. . Transcriptional suppression of CD8(+) T cell exhaustion for improving T cell immunotherapy. Cancer Commun. (Lond.) 41(11), 1228–1231 (2021).
- 51. TOX is a critical regulator of tumour-specific T cell differentiation. Nature 571(7764), 270–274 (2019).
- 52. The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells. Nat. Immunol. 15(4), 373–383 (2014). •• The critical role of BATF in the early differentiation of CD8+ T cells was finally elucidated.
- 53. TOX transcriptionally and epigenetically programs CD8(+) T cell exhaustion. Nature 571(7764), 211–218 (2019).