We use cookies to improve your experience. By continuing to browse this site, you accept our cookie policy.×
Skip main navigation
Aging Health
Bioelectronics in Medicine
Biomarkers in Medicine
Breast Cancer Management
CNS Oncology
Colorectal Cancer
Concussion
Epigenomics
Future Cardiology
Future Medicine AI
Future Microbiology
Future Neurology
Future Oncology
Future Rare Diseases
Future Virology
Hepatic Oncology
HIV Therapy
Immunotherapy
International Journal of Endocrine Oncology
International Journal of Hematologic Oncology
Journal of 3D Printing in Medicine
Lung Cancer Management
Melanoma Management
Nanomedicine
Neurodegenerative Disease Management
Pain Management
Pediatric Health
Personalized Medicine
Pharmacogenomics
Regenerative Medicine

Dysregulated microRNAs in laryngeal cancer: a comprehensive meta-analysis using a robust rank aggregation approach

    Zaizai Cao

    Zhejiang University, Zhejiang Province, 310003, PR China

    Department of Otolaryngology, The First Affiliated Hospital, College of Medicine, Zhejiang University, Zhejiang Province, 310003, PR China

    ,
    Yu Guo

    Zhejiang University, Zhejiang Province, 310003, PR China

    Department of Otolaryngology, The First Affiliated Hospital, College of Medicine, Zhejiang University, Zhejiang Province, 310003, PR China

    ,
    Yinjie Ao

    Zhejiang University, Zhejiang Province, 310003, PR China

    Department of Otolaryngology, The First Affiliated Hospital, College of Medicine, Zhejiang University, Zhejiang Province, 310003, PR China

    &
    Shuihong Zhou

    *Author for correspondence:

    E-mail Address: 1190051@zju.edu.cn

    Zhejiang University, Zhejiang Province, 310003, PR China

    Department of Otolaryngology, The First Affiliated Hospital, College of Medicine, Zhejiang University, Zhejiang Province, 310003, PR China

    Published Online:https://doi.org/10.2217/fon-2020-0394

    We need a reasonable method of compiling data from different studies regarding the expression of microRNA (miRNA) in laryngeal squamous cell carcinoma (LSCC). The robust rank aggregation method was used to integrate the rank lists of miRNAs from 11 studies. The enrichment analysis was performed on target genes of meta-signature miRNAs. The Cancer Genome Atlas database was used to confirm the results of meta-analysis. Three meta-signature miRNAs (miR-21-5p, miR-196a-5p and miR-145-5p) were obtained. All three miRNAs could be prognostic for LSCC. The enrichment analysis showed that these miRNAs were associated significantly with multiple cancer-related signaling pathways. The robust rank aggregation approach is an effective way to identify important miRNAs from different studies. All identified miRNAs could be candidates for LSCC diagnostic and prognostic biomarkers.

    Papers of special note have been highlighted as: • of interest; •• of considerable interest

    References

    • 1. Gamez ME, Blakaj A, Zoller W, Bonomi M, Blakaj DM. Emerging concepts and novel strategies in radiation therapy for laryngeal cancer management. Cancers (Basel) 12(6), E1651 (2020).
    • 2. Obid R, Redlich M, Tomeh C. The treatment of laryngeal cancer. Oral Maxillofac. Surg. Clin. North Am. 31(1), 1–11 (2019).
    • 3. Ambros V. MicroRNAs: tiny regulators with great potential. Cell 107(7), 823–826 (2001).
    • 4. Zhang B, Pan X, Cobb GP, Anderson TA. MicroRNAs as oncogenes and tumor suppressors. Dev. Biol. 302(1), 1–12 (2007).
    • 5. Võsa U, Kolde R, Vilo J, Metspalu A, Annilo T. Comprehensive meta-analysis of microRNA expression using a robust rank aggregation approach. Methods Mol. Biol. 1182, 361–373 (2014). • This article describes the principle of robust rank aggregation (RRA) and the implementation code in detail.
    • 6. Naorem LD, Muthaiyan M, Venkatesan A. Identification of dysregulated miRNAs in triple negative breast cancer: a meta-analysis approach. J. Cell. Physiol. 234(7), 11768–11779 (2019).
    • 7. Võsa U, Vooder T, Kolde R, Vilo J, Metspalu A, Annilo T. Meta-analysis of microRNA expression in lung cancer. Int. J. Cancer 132(12), 2884–2893 (2013). • This article also describes the RRA method in detail.
    • 8. Wang M, Xie R, Si H, Shen B. Integrated bioinformatics analysis of miRNA expression in osteosarcoma. Artif. Cells Nanomed. Biotechnol. 45(5), 936–943 (2017).
    • 9. Kolde R, Laur S, Adler P, Vilo J. Robust rank aggregation for gene list integration and meta-analysis. Bioinformatics 28(4), 573–580 (2012).
    • 10. Zhang C, Gao W, Wen S et al. Potential key molecular correlations in laryngeal squamous cell carcinoma revealed by integrated analysis of mRNA, miRNA and lncRNA microarray profiles. Neoplasma. 63(6), 888–900 (2016).
    • 11. Zhao R, Li FQ, Tian LLTian LL et al. Comprehensive analysis of the whole coding and non-coding RNA transcriptome expression profiles and construction of the circRNA-lncRNA co-regulated ceRNA network in laryngeal squamous cell carcinoma. Funct. Integr. Genomics. 19(1), 109–121 (2019).
    • 12. Ekmekci CG, Coskunpinar E, Avci H, Farooqi AA, Orhan KS, Akbas F. Integrative analysis of mRNA and microRNA expression profiles in laryngeal squamous cell carcinoma. J. Cell Biochem. 120(3), 3415–3422 (2019).
    • 13. Janiszewska J, Szaumkessel M, Kostrzewska-Poczekaj M et al. Global miRNA expression profiling identifies miR-1290 as novel potential oncomiR in laryngeal carcinoma. PLoS ONE.. 10(12), e0144924(2015).
    • 14. Zhang T, Han G, Wang Y, Chen K, Sun Y. MicroRNA expression profiles in supraglottic carcinoma. Oncol. Rep. 31(5), 2029–2034 (2014).
    • 15. Sun X, Song Y, Tai X, Liu B, Ji W. MicroRNA expression and its detection in human supraglottic laryngeal squamous cell carcinoma. Biomed Rep. 1(5), 743–746 (2013).
    • 16. Cao P, Zhou L, Zhang J et al. Comprehensive expression profiling of microRNAs in laryngeal squamous cell carcinoma. Head Neck. 35(5), 720–728 (2013).
    • 17. Petrović N. MiR-21 might be involved in breast cancer promotion and invasion rather than in initial events of breast cancer development. Mol. Diagn. Ther. 20(2), 97–110 (2016).
    • 18. Wu Y, Song Y, Xiong Y et al. MicroRNA-21 (miR-21) promotes cell growth and invasion by repressing tumor suppressor PTEN in colorectal cancer. Cell. Physiol. Biochem. 43(3), 945–958 (2017).
    • 19. Zhou B, Wang D, Sun G, Mei F, Cui Y, Xu H. Effect of miR-21 on apoptosis in lung cancer cell through inhibiting the PI3K/Akt/NF-κB signaling pathway in vitro and in vivo. Cell. Physiol. Biochem. 46(3), 999–1008 (2018).
    • 20. Cao P, Zhou L, Zhang J et al. Comprehensive expression profiling of microRNAs in laryngeal squamous cell carcinoma. Head Neck 35(5), 720–728 (2013).
    • 21. Liu J, Lei D-P, Jin T, Zhao X-N, Li G, Pan X-L. Altered expression of miR-21 and PTEN in human laryngeal and hypopharyngeal squamous cell carcinomas. Asian Pac. J. Cancer Prev. 12(10), 2653–2657 (2011). •• This article describes the role of miR-21-5p in laryngeal squamous cell carcinoma (LSCC); miR-21-5p is significantly related to the clinical characteristics of LSCC.
    • 22. Hu A, Huang J-J, Xu W-H et al. MiR-21 and miR-375 microRNAs as candidate diagnostic biomarkers in squamous cell carcinoma of the larynx: association with patient survival. Am. J. Transl. Res. 6(5), 604–613 (2014).
    • 23. Avissar M, McClean MD, Kelsey KT, Marsit CJ. MicroRNA expression in head and neck cancer associates with alcohol consumption and survival. Carcinogenesis 30(12), 2059–2063 (2009).
    • 24. Fu X, Han Y, Wu Y et al. Prognostic role of microRNA-21 in various carcinomas: a systematic review and meta-analysis. Eur. J. Clin. Invest. 41(11), 1245–1253 (2011).
    • 25. Liu M, Wu H, Liu T et al. Regulation of the cell cycle gene, BTG2, by miR-21 in human laryngeal carcinoma. Cell Res. 19(7), 828–837 (2009).
    • 26. Xu Y-T, Chen R-Q, Lin G-B et al. Defining the regulatory role of programmed cell death 4 in laryngeal squamous cell carcinoma. Biochem. Cell Biol. 96(5), 522–538 (2018).
    • 27. Saito K, Inagaki K, Kamimoto T et al. MicroRNA-196a is a putative diagnostic biomarker and therapeutic target for laryngeal cancer. PLoS ONE 8(8), e71480–e71480 (2013).
    • 28. Jin C, Zhang Y, Li J. Upregulation of MiR-196a promotes cell proliferation by downregulating p27(kip1) in laryngeal cancer. Biol. Res. 49(1), 40–40 (2016). •• This article describes the role of miR-196a-5p in LSCC; miR-196a-5p can promote the proliferation by downregulating p27kip1 in LSCC.
    • 29. Iorio MV, Ferracin M, Liu C-G et al. MicroRNA gene expression deregulation in human breast cancer. Cancer Res. 65(16), 7065–7070 (2005).
    • 30. Kano M, Seki N, Kikkawa N et al. MiR-145, miR-133a and miR-133b: tumor-suppressive miRNAs target FSCN1 in esophageal squamous cell carcinoma. Int. J. Cancer 127(12), 2804–2814 (2010).
    • 31. Sewer A, Kogel U, Talikka M et al. Evaluation of the tobacco heating system 2.2 (THS2.2). Part 5: microRNA expression from a 90-day rat inhalation study indicates that exposure to THS2.2 aerosol causes reduced effects on lung tissue compared with cigarette smoke. Regul. Toxicol. Pharmacol. 81(Suppl. 2), S82–S92 (2016).
    • 32. Karatas OF, Yuceturk B, Suer I et al. Role of miR-145 in human laryngeal squamous cell carcinoma. Head Neck 38(2), 260–266 (2016). •• This article describes the role of miR-145-5p in LSCC; miR-145-5p could be an important regulator of SOX2.
    • 33. Karatas OF, Suer I, Yuceturk B et al. The role of miR-145 in stem cell characteristics of human laryngeal squamous cell carcinoma Hep-2 cells. Tumour Biol. 37(3), 4183–4192 (2016).
    • 34. Ye D, Zhou C, Deng H, Lin L, Zhou S. MicroRNA-145 inhibits growth of laryngeal squamous cell carcinoma by targeting the PI3K/Akt signaling pathway. Cancer Manag. Res. 11, 3801–3812 (2019). • This article was previously published by our team and reveals the important role of miR-145-5p in the growth of laryngeal cancer.
    • 35. Gao W, Zhang C, Li W et al. Promoter methylation–regulated miR-145-5p inhibits laryngeal squamous cell carcinoma progression by targeting FSCN1. Mol. Ther. 27(2), 365–379 (2019).