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Validating a research ethnicity questionnaire using genomic markers

    Nuwan C Hettige

    Institute of Medical Science, University of Toronto, 1 King's College Circle, Toronto, Ontario, M5S 1A8, Canada

    Center for Addiction & Mental Health, 250 College Street, Toronto, Ontario, M5T 1R8, Canada

    ,
    Ali Bani-Fatemi

    Institute of Medical Science, University of Toronto, 1 King's College Circle, Toronto, Ontario, M5S 1A8, Canada

    Center for Addiction & Mental Health, 250 College Street, Toronto, Ontario, M5T 1R8, Canada

    &
    Vincenzo De Luca

    *Author for correspondence: Tel.: +1 416 535 8501 ext. 34421; Fax: + 1 416 979 4666;

    E-mail Address: vincenzo_deluca@camh.net

    Institute of Medical Science, University of Toronto, 1 King's College Circle, Toronto, Ontario, M5S 1A8, Canada

    Department of Psychiatry, University of Toronto, 250 College Street, Toronto, Ontario, Canada

    Center for Addiction & Mental Health, 250 College Street, Toronto, Ontario, M5T 1R8, Canada

    Published Online:https://doi.org/10.2217/pgs-2017-0051

    Aim: Population stratification is a confounding factor in genetic association studies. Self-report measures, the most common method of collecting ethnicity, may be less reliable for psychiatric patients. This study aims to validate our research ethnicity questionnaire as a reliable measure of genetic ancestry. Methods: The validity of our questionnaire was compared with genetic ancestry according to structured association tests and dimensional reduction methods. Our research tool was also compared with a standard multiple choice questionnaire. Results: Our research questionnaire was highly consistent with genetic ancestry. The standard questionnaire demonstrated a greater degree of inconsistency in identifying ethnicity. Conclusion: Collecting information on the geographical ancestry of each individual's grandparents provides a more comprehensive view of ethnicity to prevent population stratification and wasted finances on genotyping.

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