Abstract
circRNA is a type of RNA molecule with a circular structure. From initially thinking it was useless to now discovering that it has important and complex functions, the importance of circRNA is increasingly being recognized. circRNA was first discovered as an ncRNA with a molecular sponge function. Clinically, due to its special molecular structure, researchers are generally interested in its potential as a biomarker. Recently, circRNA has been proven to have many functions other than encoding proteins. In the clinical setting, circRNA also has strong potential for application in vaccine preparation and targeted therapy. This article discusses the synthesis of circRNA, introduces its functions and discusses its future development prospects.
Tweetable abstract
#circRNA##Review# This article describes the research and development process of circRNA. It explores circRNA's mechanism and provides a prospect for its future development. Further research on this molecule is of great significance.
Papers of special note have been highlighted as: • of interest; •• of considerable interest
References
- 1. . Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc. Natl Acad. Sci. USA 73(11), 3852–3856 (1976). • This article is the first one about circRNA.
- 2. . The biogenesis, biology and characterization of circular RNAs. Nat. Rev. Genet. 20(11), 675–691 (2019). • This article first found that circRNA could have functions.
- 3. . 5′- and 3′-noncoding regions in flavivirus RNA. Adv. Virus Res. 59, 177–228 (2003).
- 4. . Circular RNA and miR-7 in cancer. Cancer Res. 73(18), 5609–5612 (2013).
- 5. . The expanding regulatory mechanisms and cellular functions of circular RNAs. Nat. Rev. Mol. Cell Biol. 21(8), 475–490 (2020). •• An important review talking about circRNA in detail.
- 6. . CircRNA in cancer: fundamental mechanism and clinical potential. Cancer Lett. 505, 49–57 (2021).
- 7. . New bedfellows in the mammalian sex-determination affair. TIG 11(5), 161–163 (1995).
- 8. . Non-coding RNA regulatory networks. Biochim. Biophys. Acta Gene Regul. Mech. 1863(6), 194417 (2020).
- 9. . Circular RNAs: characterization, cellular roles, and applications. Cell 185(12), 2016–2034 (2022).
- 10. Circular RNA: a new star of noncoding RNAs. Cancer Lett. 365(2), 141–148 (2015).
- 11. The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting. Mol. Cell 68(5), 940–954.e943 (2017). • The design of the experiment is typical in this article.
- 12. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495(7441), 333–338 (2013).
- 13. Argonaute 2 complexes selectively protect the circulating microRNAs in cell-secreted microvesicles. PLOS ONE 7(10), e46957 (2012).
- 14. Natural RNA circles function as efficient microRNA sponges. Nature 495(7441), 384–388 (2013).
- 15. CircCYP24A1 facilitates esophageal squamous cell carcinoma progression through binding PKM2 to regulate NF-κB-induced CCL5 secretion. Mol. Cancer 21(1), 217 (2022).
- 16. Chemotherapy-induced senescence reprogramming promotes nasopharyngeal carcinoma metastasis by circRNA-mediated PKR activation. Adv. Sci. (Weinh.) 10(8), e2205668 (2023).
- 17. Circular RNA FEACR inhibits ferroptosis and alleviates myocardial ischemia/reperfusion injury by interacting with NAMPT. J. Biomed. Sci. 30(1), 45 (2023).
- 18. Exon-intron circular RNAs regulate transcription in the nucleus. Nat. Struct. Mol. Biol. 22(3), 256–264 (2015). •• A typical article about the circRNA functions in the nucleus.
- 19. CircRNA biogenesis competes with pre-mRNA splicing. Mol. Cell 56(1), 55–66 (2014).
- 20. CircMbl functions in cis and in trans to regulate gene expression and physiology in a tissue-specific fashion. Cell Rep. 39(4), 110740 (2022).
- 21. CircRAPGEF5 interacts with RBFOX2 to confer ferroptosis resistance by modulating alternative splicing of TFRC in endometrial cancer. Redox Biol. 57, 102493 (2022).
- 22. Circular RNAs drive oncogenic chromosomal translocations within the MLL recombinome in leukemia. Cancer Cell
doi: 10.1016/j.ccell.2023.05.002 (2023) (Epub ahead of print). •• This is a very interesting article with novel and inspiring content. - 23. . The RNA modification landscape in human disease. RNA 23(12), 1754–1769 (2017).
- 24. . Link between m6A modification and cancers. Front. Bioeng. Biotechnol. 6, 89 (2018).
- 25. Circular RNA circMTO1 acts as the sponge of microRNA-9 to suppress hepatocellular carcinoma progression. Hepatology 66(4), 1151–1164 (2017). • This is a well-researched article with thought-provoking implications.
- 26. A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1. Genome Biol. 19(1), 218 (2018).
- 27. . Translation and functional roles of circular RNAs in human cancer. Mol. Cancer 19(1), 30 (2020).
- 28. . Internal ribosome entry site (IRES)-mediated translation and its potential for novel mRNA-based therapy development. Biomedicines 10(8), 1865 (2022).
- 29. . Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo. RNA 4(9), 1047–1054 (1998).
- 30. Circular HER2 RNA positive triple negative breast cancer is sensitive to pertuzumab. Mol. Cancer 19(1), 142 (2020).
- 31. Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus. Nat. Commun. 10(1), 2300 (2019).
- 32. Enhancement of TKI sensitivity in lung adenocarcinoma through m6A-dependent translational repression of Wnt signaling by circ-FBXW7. Mol. Cancer 22(1), 103 (2023).
- 33. . Circular RNAs are promising biomarkers in liquid biopsy for the diagnosis of non-small cell lung cancer. Front. Mol. Biosci. 8, 625722 (2021).
- 34. Circular RNA Hsa_circ_0066755 as an oncogene via sponging miR-651 and as a promising diagnostic biomarker for nasopharyngeal carcinoma. Int. J. Med. Sci. 17(11), 1499–1507 (2020).
- 35. Profiling and functional analysis of circular RNAs in acute promyelocytic leukemia and their dynamic regulation during all-trans retinoic acid treatment. Cell Death Dis. 9(6), 651 (2018).
- 36. . Engineering circular RNA for potent and stable translation in eukaryotic cells. Nat. Commun. 9(1), 2629 (2018). •• This article is highly innovative and interesting.
- 37. Engineering circular RNA for enhanced protein production. Nat. Biotechnol. 41(2), 262–272 (2023).
- 38. Circular RNA vaccines against SARS-CoV-2 and emerging variants. Cell 185(10), 1728–1744.e1716 (2022).
- 39. Sensing self and foreign circular RNAs by intron identity. Mol. Cell 67(2), 228–238.e225 (2017).
- 40. . RNA circularization diminishes immunogenicity and can extend translation duration in vivo. Mol. Cell 74(3), 508–520.e504 (2019).
- 41. N6-methyladenosine modification controls circular RNA immunity. Mol. Cell 76(1), 96–109.e109 (2019).
- 42. Structure and degradation of circular RNAs regulate PKR activation in innate immunity. Cell 177(4), 865–880.e821 (2019).
- 43. . CRISPR/Cas9-based tools for targeted genome editing and replication control of HBV. Virol. Sin. 30(5), 317–325 (2015).
- 44. CRISPR-Mediated Induction of Neuron-Enriched Mitochondrial Proteins Boosts Direct Glia-to-Neuron Conversion. Cell Stem Cell. 28(3), 524–534 (2021).